Wednesday, August 26
11:45 am Recommended Short Course*
SC8: Targeted Protein Degradation Using PROTACs, Molecular Glues, and More
*Premium VIRTUAL Pricing or separate registration required. See short course page for details.
1:50 pm Leveraging Image-Derived Phenotypic Measurements for Drug-Target Interaction Predictions
Arvind Rao, PhD, Associate Professor, Department of Computational Medicine and Bioinformatics, University of Michigan
We propose a novel in silico drug discovery approach to identify kinase targets that impinge on nuclear receptor signaling with data generated using high-content analysis (HCA). Using imaging-derived descriptors, we provide prediction results of drug-kinase-target interactions based on single-task learning, multi-task learning, and collaborative filtering methods. These promising results suggest that imaging-based information can be used as an additional source of information for existing virtual screening methods, thereby making the drug discovery process more time and cost efficient.
2:10 pm New Anti-Cancer Peptide Design Using a GAN-Based Deep Learning Method
Wenjin Zhou, PhD, Assistant Professor, Computer Science, University of Massachusetts Lowell
Cancer is a deadly disease that causes an estimated 9.6 million deaths a year. Pharmaceutical drugs are important but developing new drugs is difficult and expensive. Here we generate a new peptide for PD-1, which is closely linked to a wide variety of cancers, using a new application called GANDALF to design new peptides. We present a peptide generated by our prototype to bind with PD1 and compare it to FDA approved drugs and results from a comparable method, Pepcomposer.
2:30 pm Deep Generative Autopilot for the Real-world Design of Novel Lead Compounds
Sang Ok Song, PhD, Co-Founder & Chief Transformation Officer, Standigm, Inc.
Standigm has applied deep generative models to design novel therapeutic compounds and launched Standigm BEST®, a proprietary molecular generative platform for lead discovery and optimization. On top of the main molecular generative algorithm, we developed an automated molecular design workflow to optimize and prioritize machine generated compounds for further synthesis and experimental validation. The most recent progress including real-life case studies will be shared.
Decisions taken in early drug discovery, from target selection to selecting the right chemical series greatly impact late stage attrition. We have developed data driven workflows that integrate heterogeneous data for target selection, lead identification and optimization in a holistic manner.This leads to better predictability and targeted experimentation.
3:10 pm LIVE PANEL: Q&A with Session Speakers
Panel Moderator:
Arvind Rao, PhD, Associate Professor, Department of Computational Medicine and Bioinformatics, University of Michigan
Panelists:
Wenjin Zhou, PhD, Assistant Professor, Computer Science, University of Massachusetts Lowell
Sang Ok Song, PhD, Co-Founder & Chief Transformation Officer, Standigm, Inc.
3:30 pm Happy Hour - View our Virtual Exhibit Hall
4:15 pm Close of Day
Thursday, August 27
10:00 am PLENARY KEYNOTE: Translational Chemistry
Phil S. Baran, PhD, Chair & Professor, Chemistry, Scripps Research Institute
There can be no more noble undertaking than the invention of medicines. Chemists that make up the engine of drug discovery are facing incredible pressure to do more with less in a highly restrictive and regulated process that is destined for failure more than 95% of the time. How can academic chemists working on natural products help these heroes of drug discovery – those in the pharmaceutical industry? With selected examples from our lab and others, this talk will focus on that question highlighting interesting findings in fundamental chemistry and new approaches to scalable chemical synthesis.
10:30 am LIVE Q&A: Plenary Discussion
Panel Moderator:
Daniel A. Erlanson, PhD, Vice President, Chemistry, Frontier Medicines Corp.
Panelist:
Phil S. Baran, PhD, Chair & Professor, Chemistry, Scripps Research Institute
11:00 am Interactive Breakout Discussions OR View our Virtual Exhibit Hall
In the breakout session, attendees join a Zoom Room discussion. Each room will have a moderator to ensure focused conversations around key issues within the topic. The small group format allows participants to informally meet potential collaborators, share examples from their work, and discuss ideas with peers. Attendees will have the ability to turn their camera and microphones on or off and the session will NOT be recorded NOR available On Demand.
Topic: AI-Driven Target Discovery and Therapies
Ruben Abagyan, PhD, Professor, Molecular Biology, University of California San Diego
- Types of AI models predicting individual target activities of small molecules
- May the docking be a useful intermediate step before the AI model is applied?
- How under-characterized is the set of activities of small molecule therapeutics and drug candidates?
Topic: Trends in AI for Accelerating Drug Discovery
Amol Jadhav, PhD, Industry Consultant, Transformational Health, Frost & Sullivan
- Current trends for the application of AI towards preclinical drug discovery, status and challenges
- What measures should be taken to invest and apply AI at various stages of drug development?
- Industry-Academia partnerships, shared experience from startups, academia and impact assessment
11:35 am AI for Accelerated Preclinical Drug Discovery: From Data Mining to Screening Automation
Amol Jadhav, PhD, Industry Consultant, Transformational Health, Frost & Sullivan
This presentation will focus around the role of life sciences big data, technologies and emerging application of AI for the early drug discovery. The case studies discussing the impact of automation and miniaturization approaches coupled with machine learning on the speed and efficiency for the compound screening will be discussed. Additionally, a brief assessment of the therapeutics area-wise activity, current trends will be provided.
11:55 am FEATURED PRESENTATION: Benefits, Limitations and Diversity of AI Models in Drug and Target Discovery
Ruben Abagyan, PhD, Professor, Molecular Biology, University of California San Diego
Computer models that are capable of predicting several thousands of biological activities for any chemical along with their ADMET properties have improved dramatically with the rapid growth of experimental data. The resulting network, illustrated by cancer drugs, has an extensive multi-target profile for each drug. These models use different mathematical methods, and help to predict new targets for known compounds, repurpose to new indications, search for compounds with specific multi-target profile, or identify potential liabilities.
Easy; Secure; Collaborative. As the industry’s most trusted cloud-based drug discovery data management platform, CDD Vault has provided a secure, performant solution for early-stage research informatics for over 15 years. Now, CDD has brought that same philosophy and expertise to the field of semantic drug content data and assay metadata with our new BioHarmony platform. Speed up your drug discovery process with structured FAIR data - standardized, up to date, and ready to use
12:55 pm LIVE PANEL: Q&A with Session Speakers
Panel Moderator:
Amol Jadhav, PhD, Industry Consultant, Transformational Health, Frost & Sullivan
Panelists:
Ruben Abagyan, PhD, Professor, Molecular Biology, University of California San Diego
1:15 pm Lunch Break - View our Virtual Exhibit Hall
1:50 pm FEATURED PRESENTATION: Artificial Intelligence and Small-Molecule Drug Metabolism
S. Joshua Swamidass, Associate Professor, Pathology & Immunology, Washington University
We have been building artificial intelligence models of metabolism and reactivity. Metabolism can both render toxic molecules safe and safe molecules toxic. The artificial intelligence models we use quantitatively summarize the knowledge from thousands of published studies. The hope is that we could more accurately modeling the properties of medicines, to determining whether metabolism renders drugs toxic or safe. This is just one of many places where artificial intelligence could give traction on the difficult questions facing the industry.
Better data is an obvious need for improved AI predictions, but have you considered the role of chemical descriptors? See how better descriptors improve predictions across multiple algorithms. This study by Dr. Alpha Lee (University of Cambridge) was peer reviewed and accepted at the Journal of Chemical Information and Modeling.
2:45 pm Q&A with Session Speakers
Panel Moderator:
S. Joshua Swamidass, Associate Professor, Pathology & Immunology, Washington University
3:10 pm Close of Conference
SC14: Ligand-Receptor Molecular Interactions and Drug Design (LIVE ONLY)
*Premium VIRTUAL Pricing or separate registration required. See short course page for details.